BIOL 11400: Examining the World through Evolutionary Biology
Fall 2009
Lecture: Tuesday/Thursday 9:25- 10:40
Park Auditorium

Anne Stork
168 CNS, 274-3575
astork@ithaca.edu

Office Hours: 

  • Wednesday / Thursday 10:40- 11:45
    • Make an appointment through e-mail or after lecture is best.


Lecture Schedule  (check for updates on BlackBoard)

Text and Other Required Course Materials:
Kardong, Kenneth. An Introduction to Biological Evolution.   Second Edition.

Selected readings available on BlackBoard.

Interwrite Personal Response System (PRS) or “clicker.” Each student must purchase their own clicker at the campus bookstore.  Bring your clicker to class on September 8 for your first “clicker quiz.” 

Course Description:

Evolutionary biology not only helps us to understand how and why organisms have become the way they are, evolution is a feature of our everyday lives. In this course we will examine the mechanisms that have resulted in the rich diversity of life on our planet. We will also explore how evolutionary biology helps us to understand current issues in ecology, conservation biology, global climate change, agriculture, and human health and medicineTopics in this course will include: the fossil record, biodiversity, mass extinctions, human evolution, infectious diseases and antibiotic resistance. The focus of the course will be concepts over details and scientific reasoning over terminology.

My goal for you as a student is that you expand your critical thinking and science literacy skills, skills which will serve you for a lifetime. Listening attentively to the lectures in this course will provide you with pertinent background information on evolutionary biology issues. However, to really learn how to think about evolution, you will need to do just that. So, come to lecture each day prepared to fully engage your brain. In this course we will have short clicker quizzes, small group work, and class discussions to facilitate your understanding of how evolutionary biology influences our everyday lives.

BlackBoard:
BlackBoard will be used extensively in this course for posting lectures, the updated syllabus, outside readings, assignments, and general notices regarding the course. 
Syllabus:
Contents of the syllabus are subject to change as the semester progresses. Therefore, always refer to Blackboard to find out the current assignment/readings dates.
Grading:
We will have daily, short “clicker” quizzes that will test your understanding of the reading and previous material. In addition, we will have two short assignments and three exams. The third exam, the final, will be cumulative.

DAILY, SHORT “CLICKER” QUESTIONS:

We will have daily, multiple choice “clicker” questions to help you engage with the lecture material and foster discussion.  We will be using the Interwrite Personal Response System (PRS or clickers) each day in class to take these quizzes. If you forget your PRS, you will receive a “0” for the day so REMEMBER TO BRING YOUR PRS TO EACH CLASS!  NOTE: Using someone else’s PRS is considered to be plagiarism and therefore cheating. Plagiarism cases will be dealt with as outlined below in the plagiarism section.

BLACKBOARD QUIZZES:

There will be seven online quizzes on Blackboard. These quizzes will be open book (your text) and you may work with other members of the class.

SHORT assignments:

  1. Evolution in the News Presentation- to be explained in class
  2. Hardy-Weinberg worksheet

 MAKING UP Assignments/late assignmnents:

You cannot make up missed clicker question points.  Unless we have previous arrangements, if the Hardy-Weinberg worksheet is not in by the due date, I will deduct 10 points for each day it is late. You need to hand in this assignment in class; I do not accept work that is e-mailed unless I ask for that exercise to be submitted via e-mail or we have made previous arrangements.GRADING:
 

20 % 
Daily Clicker Quizzes 

18%
Online Blackboard Quizzes

8%
Evolution in the News Presentation

6% 
Hardy-Weinberg worksheet

48%
Exams (16 % each for exams 1, 2, and final)

Attendance:

This is an interactive class and your participation is critical to the success of the entire class.  In addition, you are expected to attend every class session on time. If you do miss class, you are still responsible for all material presented in class and for any assignments/changes announced in class. If you miss class due to an excused absence, you are still responsible for material presented during class.

If you miss an exam during an unexcused absence you will get a 0 for that exam. Should an emergency arise, you are responsible for informing me before the class you will miss. If you are unable to call, have someone make the call for you. Calling me does not guarantee my acceptance of your reason for absence, but failing to notify me, even if your absence is excused, does guarantee that you will get a 0 for that exam. 

Course evaluations:

Student input is highly valued and is important to maintain high quality instruction.  Course evaluations are mandatory  and must be completed by Friday, Dec 4An incomplete will appear on your transcript  if it is not submitted by that time.  The evaluation will be submitted to the Department Assistant. She will verify that you have submitted the form.  Once that has been checked, your identification will be removed and will not be printed with the comments.

Plagiarism:
Please review the College’s definition of plagiarism is it appears in the Student Handbook.  I will report all plagiarism offenders to Judicial Affairs. In a collaborative project, all students in a group may be held responsible for academic misconduct if they engage in plagiarism or are aware of plagiarism by others in their group and fail to report it. Students who participate in a collaborative project in which plagiarism has occurred will not be held accountable if they were not knowledgeable of the plagiarism.
Accommodations:
Every effort will be made to accommodate special needs of students. Please consult the Student Handbook for procedures and policies regarding accommodations.

Diminished mental health, including significant stress, mood changes, excessive worry, or problems with eating and/or sleeping can interfere with optimal academic performance. The source of symptoms might be strictly related to your course work; if so, please speak with me. However, problems with relationships, family worries, loss, or a personal struggle or crisis can also contribute to decreased academic performance. Ithaca College provides a Counseling Center to support the academic success of students. The Counseling Center provides cost-free services to help you manage personal challenges that threaten your well-being. In the event I suspect you need additional support, I will express my concerns and the reasons for them, and remind you of resources (e.g., Counseling Center, Health Center, chaplains, etc.) that might be helpful to you. It is not my intention to know the details of what might be bothering you, but simply to let you know I am concerned and that help, if needed, is available.

Syllabus:

Date

Topic

Assignments

Th Aug 27

Intro

What is evolution- and why does it matter to me?

 

Tu Sept 1

Evidence for Evolution

 

Chapter 6

pp 28-38

Th

Sept 3

Emergence of Life

 

BB reading

Chapter 20 “Life’s Origin and Early Evolution” in  Evolution of Life

Tu Sept 8

Darwin - How He Changed How We Viewed the World

 

Blackboard Quiz 1 on Chapter 6 and pp 28-38 due by 9 am.

 

Bring PRS Clicker to Class!!!

 

BB-Chapter 2 Volpe and Rausenbaum

 

Hardy-Weinberg homework handed out

Th Sept 10

Darwin continued

BB- National Geographic readings

Tu Sept 15

Why Genetics Matters and Mutations

Blackboard Quiz 2 on Chapter 3 and pp 145-151 due by 9 am.

 

Chapter 3 and pp.145-151

 

Th Sept 17

Hardy-Weinberg Equilibrium

Sources of Genetic Variation

BB-Chapter 5 Volpe and Rausenbaum

Hardy-Weinberg assignment due

Tu Sept 22

Natural and  Artificial Selection

Blackboard Quiz 3 on pp 123-132 due by 9 am.

pp. 123-132

 

Th Sept 24

Selection continued

Coevolution

“Fast-Reproducing Microbes Provide a Window on Natural Selection”

Chapter 10

Tu Sept 29

Graded clicker REVIEW for exam

 

Th Oct 1

EXAM 1

 

Tu Oct 6

Genetic Drift and Gene Flow

 

BB-Chapter 9 Volpe and Rausenbaum

Th Oct 8

Speciation

Punctuated Equilibrium

BB-Chapter 10 Volpe and Rausenbaum

Tu Oct 13

Phylogenies

Molecular Evolution

Molecular Clock

Blackboard Quiz 4 on Chapter 9 and pp 216-221 due by 9 am.

 

Chapter 9

pp. 216-221

“Electric Fish In Africa Could Be Example Of Evolution In Action”

Th Oct 15

FALL BREAK

 

Tu Oct 20

Molecular Clock II

BB-Chapter 15 Volpe and Rausenbaum

“Foresight in Genome Evolution

http://www.livescience.com/animals/060501_tropics_evo.html

Th Oct 22

DEVO EVO

pp. 151-156

http://www.nytimes.com/2007/06/26/science/26devo.html?ex=1187928000&en=3f27141e0157fe8d&ei=5070

Read:

 

http://www.americanscientist.org/template/AssetDetail/assetid/39001?fulltext=true&print=yes

 

Tu Oct 24

Emergence of the Human Species

 

Blackboard Quiz 5 on Chapter 14 due by 9 am.

 

Chapter 14

Th Oct 29

Graded clicker Review

 

Tu Nov 3

Exam 2

 

Th Nov 5

Mass Extinction Events- Times Past.

Blackboard Quiz 6 Chapter 13 due by 9 am.

Chapter 13

Tu Nov 10

Extinction Today

Include Alien species, habitat destruction, climate change

TBA

Th Nov 12

Evolution and Global Climate Change Part II

 

Evolutionary Response to Rapid Climate Change

http://www.sciencemag.org/cgi/content/full/312/5779/1477

 

The Sixth Extinction

http://www.actionbioscience.org/newfrontiers/eldredge2.html

 

How Will the Sixth Extinction Affect the Evolution of Species?

http://www.actionbioscience.org/newfrontiers/myers_knoll.html

Tu Nov 17

Evolution and Preserving Species Diversity- What We Can Do

“Birds Band Together to Raise Offspring in Dire Times”

“Earth Could Lose Thousands Of At-Risk Species: Studies Indicate Extinctions Are Not Random Events”

“Global warming 'altering genes' “

 

“Global warming is leading to changes in the genetic make-up of animals”

 

“Warm Water Creatures May Soon Rule the Oceans

Th Nov 19

*Evolution and Why it Matters for Human Health

Evolutionary Medicine

Evolutionary Biologist Aim to Protect Madagascar’s Plants and Animals

http://www.actionbioscience.org/evolution/roberson.html

“Viewpoints: Saving species”

 

Tu Nov 24

Thanksgiving Break

 

Th Nov 26

Thanksgiving Break

 

Tu Dec 1

Evolution and Human Health continued

Blackboard Quiz 7 on Chapter 16 due by 9 am.

 

Chapter 16

Th Dec

3

*Evolution and Human Health III

 

Microbes: What They Do and How Antibiotics Change Them

 http://www.actionbioscience.org/evolution/meade_callahan.html

 

“Human skin populated by veritable zoo of bacteria”

ONLINE EVALUATIONS AVAILABLE

EVALUATIONS MUST BE COMPLETED BY MONDAY DECEMBER 7 TO GET CREDIT FOR THE COURSE!

Tu Dec 8

*Evolution and Why it Matters for Farmers

 

Evolution and Medicine Network

 

http://www.evolutionandmedicine.org/

 

Darwin’s Surprise- Why are evolutionary biologists bringing back extinct deadly viruses?”

 

“Researchers use new stem cell method to treat mice”

“Elevated Carbon Dioxide In Atmosphere Weakens Defenses Of Soybeans To Herbivores”

 

Th Dec 10

 Graded clicker Quiz Review

“Natural Insecticide Re-created In The Lab”

 

 

FINAL EXAM Tuesday, Dec 15   7:30- 10:00 am

 




Go to the Biology home page.
Go to the Ithaca College home page.
--------------------------------------------------------------------------------
Page maintained and updated by Nancy Pierce and Anne Stork.
Last updated 8//2009