system

Neurobiology
BIOL 31500

Spring 2009

system
Instructor - Jean Hardwick
Office - CNS 168
Phone - 274-3213
Email - jhardwick@ithaca.edu
OfficeHours:  M 9-10:00, F 12:00-1:00, or by appointment
 Lectures:
MWF 11:00-11:50, CNS 119 chart
Discussion:
W 12:00-12:50, CNS 119

Schedule Discussion Papers

Textbook:  Neuroscience, Purves, et al (2007) 4th edition.   Additional materials, such as papers, will be available on BlackBoard.


Goals of this course:
  1. To gain a general understanding of the organization and function of the nervous system
  2. To understand the cellular and molecular events that control neuronal function
  3. To understand how disruptions in these components lead to disease and impairment of neuronal function
  4. To develop your ability to read and understand current research in neuroscience
  5. To develop your ability to communicate current research in neuroscience through oral and written formats

Grading:

Exams: 20% each

There will be three in class exams, as indicated on the syllabus.  These exams will be given on Wednesdays to allow plenty of time from both the regular lecture hour and the discussion hour for the exam.  The Monday class before the exam will be set aside for a review session.  These exams will test your general understanding of the material presented in lectures, as outlined in goals 1-3 above.

Paper Presentation:  15%

During the discussion sections we will be going over primary literature papers and current topics in neuroscience (goals 4 and 5 above).  Each student will be expected to help lead the discussion of one research paper during the semester (you will work in groups of two-three for this).  The goal is to discuss how current neuroscience research is done and to then put that research into context within society and its applications.  The oral presentations will be graded based on both the individual student performance and the performance of the group as a whole.  The expectations used for grading are outlined in the evaluation sheets which are available on the course Blackboard site.

Discussion participation:  10%

Those students not presenting are still expected to read the papers prior to the class and come prepared to discuss them.  You are expected to come to class with two questions regarding the papers assigned for that week.  These questions should be typed and turned in to me PRIOR to the presentation.  You probably should keep one copy for yourself to use during the discussion.  One question can be related to the methods, but at least one question should be more general (i.e. related to background material, interpretation, or future directions). Class participation will be monitored in each discussion section and grades determined accordingly. 

Written assignment:  20%

Each student will write a paper based on a non-fiction book related to the brain or brain function (goals 4 and 5 for the course).  A list of potential books is listed on Blackboard, but you can choose a book not on the list with prior approval from me.  For this paper, you will read a book that is written for the general public and then apply your more advanced knowledge of the brain that you have acquired over the course of the semester.  Initial drafts of the paper will be peer-reviewed, and the final draft will be turned in to me on the final day of classes.  More details on this will be discussed in class.  The grades for this section will include a grade of your paper as well as your peer reviews.  Each student will review two papers.

Attendance:   

I do not take attendance in lecture.  However, exams are based on the material presented in class, some of which is not included in the text.  Attendance at discussion sections is mandatory and points will be deducted for unexcused absences. 

 Academic Honesty: 

All the work in this class must be your own, unless stated otherwise.  Confirmed instances of academic misconduct will result in a zero for that assignment or test, and referral to the school judiciary system.  Please refer to the Student Handbook for a detailed description of the policies regarding student academic conduct.

 Students with Disabilities: 

In compliance with Section 504 of the Rehabilitation Act of 1973 and The Americans with Disabilities Act, reasonable accommodation will be provided to students with documented disabilities on a case-by-case basis.  Students must register with the Office of Academic Support Services for Students with Disabilities and provide the appropriate documentation to the College.  Before a student can expect to receive any academic adjustment, an accommodation plan from the Office of Academic Support Services must be provided to the professor.

Schedule


Date

Lecture Topic

Readings

Discussion

W 1/21

History of Neuroscience, Neurons and Glia

Chapter 1

Secret Life of the Brain

F 1/23

Gross anatomy of the brain and spinal cord

Appendix pg 815-820

 

M 1/26

Ventricular system, meninges

Appendix pg 837-842

 

W 1/28

Resting membrane potential

Chapter 2

Secret Life of the Brain

F 1/30

Action potential, voltage-clamping

Chapter 3

 

M 2/2

Voltage gated ion channels

 

 

W 2/4

Action potential propagation

 

Phantoms of the Brain(Ch 2,3)

F 2/6

Whole cell recording and patch clamp recording

Chapter 4 pg 61-74, 76-77

 

M 2/9

Synaptic transmission

Chapter 5 pg 85-107, 112-117

 

W 2/11

Neurotransmitters: ACh, catecholamines

Chapter 6 pg 119-126, 137-142, skim Chapter 7

Brain Transplant

F 2/13

Neurotransmitters: serotonin

 

 

M 2/16

Review session

 

 

W 2/18

EXAM  #1

 

(EXAM)

F 2/20

Neurotransmitters: amino acids; GABA

Chapter 6 pg126-137, 143-151

 

M 2/23

Neurotransmitters: peptides; nitric oxide

 

 

W 2/25

Somatic sensation

Chapter 9

Migraine

F 2/27

Pain, Audition

Chapter 10, 13

 

M 3/2

Audition (cont), Vestibular

Chapter 14

 

W 3/4

Taste and Smell 

Chapter 15

Bipolar Disorder

F 3/6

Motor systems; Gamma motor neurons

Chapter 16

 

3/9-3/13

Spring Break – no classes

 

 

M 3/16

Reflex pathways

Chapter 17

 

W 3/18

Motor cortex, basal ganglia

Chapter 18

Schizophrenia

F 3/20

Basal ganglia and cerebellum

Chapter 19

 

M 3/23

Review session

Draft of paper due for peer reviews

 

W 3/25

EXAM #2

 

(EXAM)

F 3/27

Prion diseases

 

 

M 3/30

Autonomic nervous system

Chapter 21

 

W 4/1

Early development of the nervous system

Chapter 22

Sensory systems

F 4/3

Neuronal migration and differentiation

Chapter 23

 

M 4/6

Trophic factors and synapse formation

 

 

W 4/8

Axonal repair and regeneration

Chapter 25

Huntington’s disease

F 4/10

Learning and memory: Anatomy

Chapter 31 

 

M 4/13

L & M: Physiology in the Aplysia

Chapter 8

 

W 4/15

L & M: Physiology in the hippocampus

Peer reviews due

Spinal cord regeneration

F 4/17

LTP and LTD

 

 

M 4/20

Alzheimer’s disease

 

 

W 4/22

Emotion and the Limbic system

Chapter 29

Dementia

F 4/24

Addiction

 

 

M 4/27

Review session

 

 

W 4/29

Exam #3

 

(EXAM)

F 5/1

Language

Chapter 27

 

M 5/4

Sleep

Chapter 28, Final draft of papers due

 


Discussion Papers

Feb 20th:   Migraine

Kahlig, K.M, et al (2008).  Divergent sodium channel defects in familial hemiplegic migraine.  Proc Nat. Acad. Sci. 105: 9799-9804. 

Feb 27th:   Biopolar Disorder

            Du, J. et al (2008).  The role of hippocampal GluR1 and GluR2 receptors in manic-like behavior. J. Neurosci. 28:  68-79.

Mar 19th:  Schizophrenia

Smith, S.P. (2007).  Maternal immune activation alters fetal brain development through interleukin-6.  J. Neurosci. 27: 10695-10702.

Mar 26th:  Sensory systems

Khasabova, I.A, et al (2007).  Chemical interactions between fibrosarcoma cancer cells and sensory neurons contribute to cancer pain.  J. Neurosci 27: 10289-10298.

Apr 16th:  Huntington’s Disease

Tang, T.S., et al (2007).  Dopaminergic Signaling and Striatal Neurodegeneration in Huntington's Disease.   J. Neurosci. 27: 7899-7910.

Apr 23rd:  Spinal Cord Regeneration

Erschbamer, M., et al (2007).  Inhibiting epidermal growth factor receptors improves structural, locomotor, sensory, and bladder recovery from experimental spinal cord injury.  J. Neurosci. 27: 6428-6435.

Apr 30th:  Dementia

Alirezaei, M.A., et al (2007).  Human immunodeficiency virus-1/surface glycoprotein 120 induces apoptosis through RNA-activated protein kinas signaling in neurons.  J. Neurosci 27: 11047-11055.


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Last updated 1/2009